List of RNAseq analyses to do

In case we have money for lots of RNAseq runs, here's a list of every sample that might be useful:

24 samples = 1 run:
Replicates of the samples we've already done:  MIV competence induction at t=0, t=10, t=30 and t=100:

• 1 x KW20, 
• 1 x sxy-, 
• 2 x ∆HI0659, 
• 2 x ∆HI0660.

Miscellaneous samples (3 replicates of each?):

• KW20 in late-log (time of max 'spontaneous' competence)
• KW20 in log phase + hydroxyurea: t=0, t=30? t=60? 
• HI0659/0660 double mutant, in MIV at t=0 (= log phase) and t=???
• murE749 mutant in log phase growth and stationary phase
• Other hypercompetence mutants:  murE750, 751, 752?  in log phase growth
• mystery hypercompetence mutant RR753 or backcross, in log phase and late-log?
• KW20 in log phase growth as control (duplicating earlier MIV t=0?)
• gcvA mutant in MIV?  or in murE749 background in log phase?
• ∆hfq mutant in MIV?  in log phase too.
• purR? purH, crp? cya?
• Cells in MIV + AMP.