I've just received a polite email from the manager of the computer cluster I'm using, asking that I learn to run my jobs properly (by submitting them to the queue) rather than just running them from the terminal. The only reason I haven't been doing the right thing is that I don't know how.
So he pointed me to a web page with instructions, which were rather opaque to me because I don't really speak Unix. So then I asked the post-doc who's been doing this with her Perl program, and she pointed me to a set of instructions I'd scribbled down about 18 months ago, when I first learned about this computer cluster from a whiz-bang grad student in another lab.
So I've more-or-less blindly followed these instructions, and submitted my first job to the queue. I know I did that part correctly because I can ask the terminal to show me the queue and my job is indeed in it, along with about a zillion other jobs. Mine is 53rd, so there are a zillion-53 jobs after mine. There are also about half a zillion jobs already running, so maybe being 53rd is pretty good. Some of the jobs that are running aren't predicted to finish for more than a week.... (You can probably tell that I'm out of my depth here.)
The really annoying thing is that I don't get any feedback until my job is done, when I'll get an email. Guess I'd better learn how to work this system.
- Home
- Angry by Choice
- Catalogue of Organisms
- Chinleana
- Doc Madhattan
- Games with Words
- Genomics, Medicine, and Pseudoscience
- History of Geology
- Moss Plants and More
- Pleiotropy
- Plektix
- RRResearch
- Skeptic Wonder
- The Culture of Chemistry
- The Curious Wavefunction
- The Phytophactor
- The View from a Microbiologist
- Variety of Life
Field of Science
-
-
-
Political pollsters are pretending they know what's happening. They don't.4 weeks ago in Genomics, Medicine, and Pseudoscience
-
-
Course Corrections6 months ago in Angry by Choice
-
-
The Site is Dead, Long Live the Site2 years ago in Catalogue of Organisms
-
The Site is Dead, Long Live the Site2 years ago in Variety of Life
-
Does mathematics carry human biases?4 years ago in PLEKTIX
-
-
-
-
A New Placodont from the Late Triassic of China5 years ago in Chinleana
-
Posted: July 22, 2018 at 03:03PM6 years ago in Field Notes
-
Bryophyte Herbarium Survey7 years ago in Moss Plants and More
-
Harnessing innate immunity to cure HIV8 years ago in Rule of 6ix
-
WE MOVED!8 years ago in Games with Words
-
-
-
-
post doc job opportunity on ribosome biochemistry!9 years ago in Protein Evolution and Other Musings
-
Growing the kidney: re-blogged from Science Bitez9 years ago in The View from a Microbiologist
-
Blogging Microbes- Communicating Microbiology to Netizens10 years ago in Memoirs of a Defective Brain
-
-
-
The Lure of the Obscure? Guest Post by Frank Stahl12 years ago in Sex, Genes & Evolution
-
-
Lab Rat Moving House13 years ago in Life of a Lab Rat
-
Goodbye FoS, thanks for all the laughs13 years ago in Disease Prone
-
-
Slideshow of NASA's Stardust-NExT Mission Comet Tempel 1 Flyby13 years ago in The Large Picture Blog
-
in The Biology Files
Not your typical science blog, but an 'open science' research blog. Watch me fumbling my way towards understanding how and why bacteria take up DNA, and getting distracted by other cool questions.
1 comment:
Markup Key:
- <b>bold</b> = bold
- <i>italic</i> = italic
- <a href="http://www.fieldofscience.com/">FoS</a> = FoS
Subscribe to:
Post Comments (Atom)
Are you planning on going to the WestGrid information seminar this Wednesday? I plan on going. I think it will be useful for me to learn how to work the system.
ReplyDelete