This afternoon was my turn to present at lab meeting, so I talked about the results of the uptake sequences-vs-proteomes manuscript. One of the analyses we've done compares the degree of conservation (measured by % identity of BLAST alignment) with the numbers of uptake sequences. I had originally thought this was going to show a strong negative correlation (higher % identity = fewer uptake sequences), consistent with the general pattern that uptake sequences preferentially accumulate in genes lacking strong functional constraint.
But when I saw the graph of the final data I was disappointed, because the sets of genes with no uptake sequences had only slightly higher mean % identities than the sets of genes with several uptake sequences. We haven't done any statistics on these means yet, but it looked like the correlation was weak at best. So I was considering just leaving this analysis out of the manuscript. But the post-doc suggested instead keeping it in, and describing the lack of correlation as an interesting result. That seems like a good idea (though first we need to do the stats - I don't have the raw data so I've emailed my collaborator).
The same post-doc also reminded me of an analysis I did last summer (link to post). I don't think this result should go in this manuscript, as it has nothing to do with proteomes. But it might fit nicely in the reworked Gibbs-analysis manuscript.
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in The Biology Files
Not your typical science blog, but an 'open science' research blog. Watch me fumbling my way towards understanding how and why bacteria take up DNA, and getting distracted by other cool questions.
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