The batch of runs in paragraph F in last night's post ran fast, but only because they were (incorrectly) set up to use a genome sequence that was only 20 kb. I forgot that they needed longer input sequences than the 20 kb of random sequence plus 100 uptake sequences I'd used for the other runs. So now I've created 50 kb, 100 kb and 200 kb versions, seeded with 250, 500 and 1000 uptake sequences respectively, and queue'd those runs.
One of the runs I thought to have hung has finished, and it gives me enough data to fix the graph I needed it for. But I'm not going to do any more work on this until my co-authors have ahd a chance to consider whether we want to include this figure (I like it).
A new kind of problem
12 hours ago in RRResearch